Microscopy Technician

Eon Systems

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San Francisco Until 9/22/2026 2+ years exp First posted July 24, 2026 Last posted July 24, 2026
Job description

About us

Eon is building the infrastructure for large-scale connectomics data collection, reconstruction, and brain simulation. Our mission is to enable the safe and scalable development of brain emulation technology, beginning with digital twins of model organisms.

We are developing an end-to-end platform that spans tissue preparation, high-throughput microscopy, large-scale image processing, neural reconstruction, connectome-based modeling, and embodied simulation. We are looking for exceptional engineers and scientists who can help turn biological brain data into usable computational systems.

Role

We are seeking a Microscopy Technician to help operate and maintain the high-throughput imaging pipeline at the heart of our connectomics platform, working closely with our microscopy lead. You will run our microscopes to capture high-resolution 3D image volumes of expanded brain tissue, help set up and troubleshoot instruments and experiments, and keep the day-to-day acquisition pipeline organized and running smoothly.

This is a hands-on operator role for someone who has run microscopes in a core facility or high-throughput imaging environment. We are looking for someone who can reliably operate, maintain, and troubleshoot experimental and prototype instruments, and help with microscope assembly and replication under the direction of our Head of Microscopy. Successful candidates will have demonstrable experience independently operating and maintaining custom microscopy hardware.

Responsibilities

  • Operate microscopes to acquire high-resolution 3D image volumes of expanded neural tissue, sustaining high throughput and high instrument uptime.

  • Help set up, align, and calibrate microscopes and new experiments/equipment as the imaging pipeline scales.

  • Handle mounting and storage of expanded hydrogel specimens carefully to protect sample integrity.

  • Troubleshoot day-to-day imaging issues and perform routine maintenance on microscopy equipment, escalating more complex instrument problems.

  • Implement and maintain imaging pipeline organization, including specimen, throughput, and issue tracking.

Skills and Qualifications

  • Local (Bay Area, on-site) BS or MS with 2+ years of hands-on experience operating microscopes, ideally in a core facility, imaging center, or other high-throughput lab.

  • Demonstrated, hands-on understanding of the theory and practice of modern fluorescence microscopy and associated instrumentation.

  • Comfortable with day-to-day microscope alignment, calibration, and basic troubleshooting.

  • Strong organizational skills and the ability to keep a multi-step pipeline running smoothly with minimal oversight.

  • Familiarity with image acquisition and analysis software (e.g., Fiji, Imaris, or similar).

  • Ability to work collaboratively in a dynamic, fast-paced research environment.

Nice to have:

  • Experience with expansion microscopy

  • Hands-on familiarity with spinning-disk confocal or light-sheet systems

  • Comfort working with custom or home-built optical setups (assembling optics, aligning lasers, and managing software issues)

  • Basic scripting for acquisition or image processing.

Representative projects:

  • Running day-to-day acquisition on our microscopes to hit weekly data collection targets.

  • Helping set up, align, and bring a newly built microscope into routine production use.

  • Building out sample tracking and logging practices so the acquisition pipeline stays organized as throughput increases.

Salary and Benefits

$90,000–$125,000 base salary depending on experience, plus equity and benefits.

Opportunity to work in a cutting-edge field that impacts neuroscience and AI safety.

About this role

Summary

Operate, maintain, and troubleshoot microscopes in high-throughput neuroscience research.

Job title

Microscopy Technician

Experience level

2+ years

Minimum experience

2+ years exp

Industry

biotech

Location requirements

On-site in San Francisco, no remote work

Salary

$90k–$125k

Management role

No

Skills & keywords

Required skills

microscope operationfluorescence microscopyinstrument troubleshootingsample handlingsoftware (Fiji, Imaris)

Preferred skills

expansion microscopyconfocal systemsoptical setup assemblyscripting

Specializations

fluorescence microscopyimaging hardwaresample handlinginstrument troubleshootingpipeline organization
Locations

Structured locations inferred from the posting.

San Francisco, CA, USA

On-site City